Citation: | Xiaomin Li, Hongli Feng, Jianguo Zhang, Lei Sun, Ping Zhu. Analysis of chromatin bersin Hela cells with electron tomography. Biophysics Reports, 2015, 1(1): 51-60. doi: 10.1007/x41048-015-0009-9 |
参考文献
|
Athey BD, Smith MF, Rankert DA, William SP, Langmore JP (1990) The diameters of frozen-hydrated chromatin fibers increase with DNA linker length: evidence in support of variable diameter models for chromatin. J Cell Biol 111:795-806
|
Bednar J, Horowitz RA, Dubochet J, Woodcock CL (1995) Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopy. J Cell Biol 131:1365-1376
|
Daban JR (2011) Electron microscopy and atomic force microscopy studies of chromatin and metaphase chromosome structure. Micron 42:733-750
|
Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 A resolution. J Mol Biol 319:1097-1113
|
Davies HG, Murray AB, Walmsley ME (1974) Electron-microscope observations on the organization of the nucleus in chicken erythrocytes and a superunit thread hypothesis for chromosome structure. J Cell Sci 16:261-299
|
Derenzini M, Olins AL, Olins DE (2014) Chromatin structure in situ: the contribution of DNA ultrastructural cytochemistry. Eur J Histochem 58:2307
|
Eltsov M, Maclellan KM, Maeshima K, Frangakis AS, Dubochet J (2008) Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ. Proc Natl Acad Sci USA 105:19732-19737
|
Eltsov M, Sosnovski S, Olins AL, Olins DE (2014) ELCS in ice: cryoelectron microscopy of nuclear envelope-limited chromatin sheets. Chromosoma 123:303-312
|
Everid AC, Small JV, Davies HG (1970) Electron-microscope observation on the structure of condensed chromatin: evidence for orderly arrays of unit threads on the surface of chicken erythrocyte nuclei. J Cell Sci 7:35-48
|
Fakan S, van Driel R (2007) The perichromatin region: a functional compartment in the nucleus that determines large-scale chromatin folding. Semin Cell Dev Biol 18:676-681
|
Finch JT, Klug A (1976) Solenoidal model for superstructure in chromatin. Proc Natl Acad Sci USA 73:1897-1901
|
Fussner E, Ching RW, Bazett-Jones DP (2011) Living without 30 nm chromatin fibers. Trends Biochem Sci 36:1-6
|
Gerchman SE, Ramakrishnan V (1987) Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy. Proc Natl Acad Sci USA 84:7802-780h
|
Giannasca PJ, Horowitz RA, Woodcock CL (1993) Transitions between in situ and isolated chromatin. J Cell Sci 105:551-561
|
Grigoryev SA,Woodcock CL (2012) Chromatin organization: the 30 nm fiber. Exp Cell Res 318:1448-1455
|
Horn PJ, Peterson CL (2002) Chromatin higher order foldingwrapping up transcription. Science 297:1824-1827
|
Horowitz RA, Agard DA, Sedat JW, Woodcock CL (1994) The threedimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon. J Cell Biol 125:1-10
|
Huynh VA, Robinson PJ, Rhodes D (2005) A method for the in vitro reconstitution of a defined "30 nm" chromatin fibre containing stoichiometric amounts of the linker histone. J Mol Biol 345:957-968
|
Konig P, Braunfeld MB, Sedat JW, Agard DA (2007) The threedimensional structure of in vitro reconstituted Xenopus laevis chromosomes by EM tomography. Chromosoma 116:349-372
|
Kruithof M, Chien FT, Routh A, Logie C, Rhodes D, van Noort J (2009) Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber. Nat Struct Mol Biol 16:534-540
|
Langmore JP, Paulson JR (1983) Low angle X-ray diffraction studies of chromatin structure in vivo and in isolated nuclei and metaphase chromosomes. J Cell Biol 96:1120-1131
|
Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389:251-260
|
Matsuda A, Shao L, Boulanger J, Kervrann C, Canton PM, Kner P, Agard D, Sedat JW (2010) Condensed mitotic chromosome structure at nanometer resolution using PALM and EGFPhistones. PLoS One 5:e12768
|
McDowall AW, Smith JM, Dubochet J (1986) Cryo-electron microscopy of vitrified chromosomes in situ. EMBO J 5:1395-1402
|
Rigort A, Bauerlein FJ, Leis A, Gruska M, Hoffmann C, Laugks T, Bohm U, Eibauer M, Gnaegi H, Baumeister W Plitzko JM (2010) Micromachining tools and correlative approaches for cellular cryo-electron tomography J Struct Biol 172:169-179
|
Robinson PJ, Rhodes D (2006) Structure of the "30 nm" chromatin fibre: a key role for the linker histone. Curr Opin Struct Biol 16:336-343
|
Robinson PJ, Fairall L, Huynh VA, Rhodes D (2006) EM measuremenu define the dimensions of the '30-nm' chromatin fiber: evidence for a compact, interdigitated structure. Proc Natl Acad Sci USA 103:6506-6511
|
Rogort A, Bauerlein FJB, Villa E, Eibauer M, Laugks T, Baumeister W Plitzko JM (2012) Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography. Proc Natl Acad Sci USA 109:4449-4454
|
Schalch T, Duda S, Sargent DF, Richmond TJ (2005) X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature 436:138-141
|
Scheffer MP, Eltsov M, Frangakis AS (2011) Evidence for shortrange helical order in the 30-nm chromatin fibers of erythrocyte nuclei. Proc Natl Acad Sci USA 108:16992-16997
|
Simpson RT, Stafford DW (1983) Structural features of a phased nucleosome core particle. Proc Natl Acad Sci USA 80:51-55
|
Song F, Chen P, Sun D,Wang M, Dong L, Liang D, Xu RM, Zhu P, Li G (2014) Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units. Science 344:376-380
|
Widom J, Finch JT, Thomas JO (1985) Higher-order structure of long repeat chromatin. EMBO J 4:3189-3194
|
William SP, Langmore JP (1991) Small angle X-ray scattering of chromatin. Radius and mass per unit length depend on linker length. Biophys J 59:606-618
|
William SP, Athey BD, Lj M, Schappe RS, Gough AH, Langmore JP (1986) Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length. Biophys J 49:233-248
|
Woodcock CL (1994) Chromatin fibers observed in situ in frozen hydrated sections. native fiber diameter is not correlated with nucleosome repeat length. J Cell Biol 125:11-19
|
Woodcock CL, Frado L-LY, Rattner JB (1984) The higher-order structure of chromatin: evidence for a helical ribbon arrangement. J Cell Biol 99:42-52
|